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ESM2 Tutorial Updates #426

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farhadrgh
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(NOTE: delete these instructional lines as you fill-out this PR template)

(NOTE: _template is designed to be filled-in and used as the squashed commit message for the entire PR. Italicized text is intended to be deleted as you fill in this template. Use the text between the ---)


High level summary of changes. Try to keep this as short and informative as possible: less is more.

Describe your changes. You can be more detailed and descriptive here. If it is a code change, Be sure to answer:

  • What is changing?
  • What is the new or fixed functionality?
  • Why or when would someone want to use these changes?
  • How can someone use these changes?

Summary

High level summary of changes. Try to keep this as short and informative as possible: less is more.

Details

Describe your changes. You can be more detailed and descriptive here.

Usage

How does a user interact with the changed code?

python -m your.new.module -and -all -options

Testing

How do you prove that your code behaves the way you claim?

Tests for these changes can be run via:

pytest -v tests/your/new/or/existing/test_functions.py::test_function

(NOTE: also delete this checklist as you fill-out this PR template)

Most of the changes to files with extensions *.py, *.yaml, *.yml, Dockerfile* or requirements.txt DO REQUIRE both pytest- and jet- CI stages.

@jstjohn
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jstjohn commented Nov 13, 2024

@farhadrgh would it be possible to follow the general patterns of https://github.com/NVIDIA/bionemo-framework/blob/main/docs/docs/user-guide/examples/bionemo-geneformer/geneformer-celltype-classification.ipynb and turn this into a notebook?

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